Differences

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--- software:r:r [2017-10-23 18:04] – created sraskar
+++ software:r:r [2021-02-24 16:41] (current) – [Details by clusters] anita
@@ Line 1: / Line 1: @@
-===== Using R =====
+====== Using R ======
 R is a free software environment for statistical computing and graphics.  The
@@ Line 5: / Line 5: @@
 R is a free implementation of the S language.
-For details on
+==== Running R ====
-   * [[software:r:farber|Farber]]
-==== Learning R ====
-Some resources to help learn R are:
-  * [[http://www.statmethods.net/interface/index.html|Quick-R]] on-line \
-    tutorial
-  * [[http://www.ats.ucla.edu/stat/r/|UCLA idre]] on-line tutorial
-  * [[http://swirlstats.com/|SWIRL]] interactive tutorial (may not be available by default)
-  * [[http://www.manning.com/kabacoff/|R in action]] book
-  * [[http://shop.oreilly.com/product/0636920028352.do|O'Reilly Learning R]] \
-    book
-  * [[http://stackoverflow.com/questions/tagged/r|Stack Overflow]] Questions \
-    and Answers
-==== Transitioning to R ====
-An excellent guide for converting SAS(r) and SPSS(r) to R is located at in the
-[[https://science.nature.nps.gov/im/datamgmt/statistics/R/documents/R_for_SAS_SPSS_users.pdf|R for SAS and SPSS users PDF]]
-located on the National Parks Service website.
-==== Running R ====
 === Loading R ===
 Checking for available R installations can be done with VALET as such:
@@ Line 50: / Line 24: @@
 === Interactive R ===
-For interactive R sessions, make sure you use ''workgroup'' and ''qlogin''
+For interactive R sessions, make sure you use ''workgroup'' and the appropriate job scheduler command such as ''qlogin'' for GridEngine or ''salloc'' for Slurm to connect to a compute node, then select the version of R you want to use
-to a compute node, then select the version of R you want to use
 <code>
@@ Line 72: / Line 45: @@
 === Scheduling R ===
-See the [[software:r:rscript-simple|R script in batch]] and [[software:r:rscript-sweep|R script array job in batch]] page for more
+See the [[#cluster-details|cluster details]] for R script in batch and R script array job in batch examples for more
 information on running R in batch.
@@ Line 80: / Line 53: @@
 $ Rscript /path/to/script.r
 </code>
+=====Details by cluster=====
+  * [[software:r:caviness| Caviness]]
+  * [[software:r:farber| Farber]]
+=====Additional Resources =====
+  * [[http://www.statmethods.net/interface/index.html|Quick-R]] on-line tutorial
+  * [[http://www.ats.ucla.edu/stat/r/|UCLA idre]] on-line tutorial
+  * [[http://swirlstats.com/|SWIRL]] interactive tutorial (may not be available by default)
+  * [[http://www.manning.com/kabacoff/|R in action]] book
+  * [[http://shop.oreilly.com/product/0636920028352.do|O'Reilly Learning R]] Book
+  * [[http://stackoverflow.com/questions/tagged/r|Stack Overflow]] Questions and Answers
+  * [[https://science.nature.nps.gov/im/datamgmt/statistics/R/documents/R_for_SAS_SPSS_users.pdf|R for SAS and SPSS users PDF]] An excellent guide for converting SAS(r) and SPSS(r) to R.