Differences

This shows you the differences between two versions of the page.

--- technical:recipes:cryosparc [2024-11-08 09:17] – [Start CryoSPARC] bkang
+++ technical:recipes:cryosparc [2024-11-08 13:49] (current) – [CPU job] bkang
@@ Line 3: / Line 3: @@
 CryoSPARC is an advanced software platform designed for cryo-electron microscopy (cryo-EM), playing a crucial role in research and drug discovery processes.
-This document provides the user manual for CryoSPARC, which has been installed on DARWIN.
+This document provides the user manual for CryoSPARC v4.3.1, which has been installed on DARWIN.
-{{:technical:recipes:fig1.jpg?400|}}====== Start CryoSPARC ======
+====== Start CryoSPARC master ======
 CryoSPARC will be run in a screen mode at one of GPU node ( r1t00 with tesla_t4:1 in this example ).
@@ Line 18: / Line 18: @@
 </code>
-{{:technical:recipes:fig1.jpg?400|}}
+You will see below if cryoSPARC runs successfully. Please remember your username, password, and port name, as they are printed out.
+{{:technical:recipes:fig1.jpg?600|}}
+====== Start CryoSPARC workstation and access web interface ======
+{{:technical:recipes:fig2.jpg?800|}}
+====== Start new project or attach previous project ======
+{{:technical:recipes:fig3.jpg?800|}}
+====== Attach previous project ======
+{{:technical:recipes:fig4.jpg?800|}}
+====== Set number of GPU ======
+{{:technical:recipes:fig5.jpg?800|}}
+====== Queue the job ======
+Clicking the "Queue" button will load this job, and Slurm will queue the job on the GPU node.
+{{:technical:recipes:fig6.jpg?800|}}
+====== Monitor job status ======
+{{:technical:recipes:fig7.jpg?800|}}
+====== CPU job ======
+You can also run CPU jobs in current setting.
+{{:technical:recipes:fig8.jpg?800|}}