Differences

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--- software:namd:namd [2018-03-01 16:41] – [Batch job] sraskar
+++ software:namd:namd [2021-02-24 16:38] (current) – [Details by clusters] anita
@@ Line 1: / Line 1: @@
 ====== NAMD ======
-NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
+[[http://www.ks.uiuc.edu/Research/namd/|NAMD]] (NAnoscale Molecular Dynamics) is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
 To determine the available versions of NAMD installed use
@@ Line 9: / Line 9: @@
 </code>
-===== Batch job =====
+=====Details by cluster=====
+  * [[software:namd:caviness | Caviness]]
+  * [[software:namd:farber | Farber]]
+  * [[software:namd:mills| Mills]]
-Templates for Grid Engine queue submission scripts are available for serial or parallel batch NAMD jobs on ''Mills'' & ''Farber'' in ''/opt/templates/gridengine/namd''.  Copy and edit the template based on your job by following the usage described in the ''named-serial.qs'' or ''named-parallel.qs'', respectively.
-<note tip>It is a good idea to periodically check if the template ''/opt/templates/gridengine/namd'' has changed as we learn more about what works well on a particular cluster.</note>