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software:matlab:mills [2018-12-03 11:07] – [Submit job] anita | software:matlab:mills [2019-08-29 14:49] – [Timing and core count] anita | ||
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Details on how to run these two scripts in batch are given with the resulting output files. | Details on how to run these two scripts in batch are given with the resulting output files. | ||
- | section with UNIX commands you can use to watch your jobs and gather [[#timing and core count]] numbers. | + | section with UNIX commands you can use to watch your jobs and gather [[#timings-and-core-count | timing and core count]] numbers. |
You will need to know how much memory and how many cores you should request for your jobs. | You will need to know how much memory and how many cores you should request for your jobs. | ||
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==== Matlab License Information ==== | ==== Matlab License Information ==== | ||
- | These are pushed into consumable (global, per-job) integer complexes in Grid Engine and can be checked using | + | Matlab licenses |
< | < | ||
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The page will using a Matlab function to illustrate using Matlab in batch and interactively. | The page will using a Matlab function to illustrate using Matlab in batch and interactively. | ||
- | ===== Batch example ===== | ||
- | The basic steps to run [[: | ||
==== Matlab script ==== | ==== Matlab script ==== | ||
First, write a Matlab script file. It should have a comment on the first line describing the purpose of the script and have the '' | First, write a Matlab script file. It should have a comment on the first line describing the purpose of the script and have the '' | ||
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</ | </ | ||
- | <note warning> | + | <note warning> |
In this example you will need a license for the base Matlab, and the parallel toolbox needs one license. | In this example you will need a license for the base Matlab, and the parallel toolbox needs one license. | ||
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We have the correct Grid Engine options '' | We have the correct Grid Engine options '' | ||
- | [[clusters: | + | [[: |
===== Batch parallel example ===== | ===== Batch parallel example ===== |