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--- software:matlab:farber [2019-08-29 17:44] – [Grid Engine script] anita
+++ software:matlab:farber [2020-10-29 11:16] – [Interactive parallel toolbox example] anita
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 For use on Farber, MATLAB projects should be developed using a Desktop installation of MATLAB and then copied to Farber
-to be run in batch.  Here an extended MATLAB example is considered involving one simple MATLAB function, and two MATLAB scripts to executed this function in a loop, and to execute in parallel using the Parallel Toolbox.
+to be run in batch.  Here an extended MATLAB example is considered involving one simple MATLAB function, and two MATLAB scripts to execute this function in a loop, and another to execute in parallel using the Parallel Toolbox.
 Details on how to run these two scripts in batch are given with the resulting output files.  There is also a
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 </code>
-==== Grid Engine script ====
+====== Batch job serial example ======
 Second, write a shell script file to set the Matlab environment and start Matlab running your script file. The following script file will set the Matlab environment and run the command in the [[#matlab-script|script.m]] file:
@@ Line 585: / Line 585: @@
 </code>
-<note warning>You should specify required [[#matlab-license-information-for-grid-engine|Matlab licenses for Grid-Engine]] as a resource, especially if there are limited number of license seats available for particular toolboxes.
+<note warning>You should specify required [[#matlab-license-information-for-grid-engine|Matlab licenses for GridEngine]] as a resource, especially if there are limited number of license seats available for particular toolboxes.
 In this example you will only need a license for the base Matlab, and the parallel toolbox needs one license.  We are using the default local scheduler which will give you workers on the same node with one license.
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-===== Batch parallel example =====
+====== Batch parallel example ======
 The Matlab parallel toolbox uses JVM to manage the workers and communicate while you are running.  You
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-===== Interactive example =====
+====== Interactive example ======
 The basic steps to running a [[:software:matlab#interactive-job|MATLAB]] interactively on a compute node.
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-===== MCR array job example =====
+====== MCR array job example ======
 Most Matlab functions can be compiled using the Matlab Compiler (MCC) and then deployed to run on the compute nodes in the MATLAB Compiler Runtime (MCR).  The MCR is a prerequisite for deployment, and is installed on all the compute nodes. You must use VALET to set up the libraries you will need to run your function from the command line.  You do not need to use the shell (''.sh'' file) that the compiler creates.