Using the openmpi-psm.qs
job script template found in /opt/shared/templates/gridengine/openmpi
provides the best performance for a parallel MPI run for OpenFOAM applications. Once you have copied the template for your job script (e.g. qsub_sowfa.qs
), then edit the following for your OpenFOAM application:
-m
and -M
according to the instructions if you want email to be sent at the end of the job, if the job is aborted, rescheduled, or suspended.vpkg_require openmpi/1.4.4-gcc
with your VALET package name (e.g. sowfa/2.0-OF2.1-gcc
)ABLSolver -parallel > log.ABLSolver.3.${JOB_ID} 2>err.ABLSolver.3
)#
in front of #WANT_CPU_AFFINITY=YES
#
in front of #WANT_HALF_CORES_ONLY=YES
Now submit your job script using exclusive access to prevent other jobs from running on the same node(s)
qsub -l exclusive=1 qsub_sowfa.qs
openmpi-1.5.3
which causes the following warning when initiating an MPI run mca: base: component_find: unable to open /opt/shared/openfoam/2.1. 1-gcc/ThirdParty-2.1.1/platforms/linux64Gcc/openmpi-1.5.3/lib/openmpi/mca_plm_rs hd: /opt/shared/openfoam/2.1.1-gcc/ThirdParty-2.1.1/platforms/linux64Gcc/openmpi -1.5.3/lib/openmpi/mca_plm_rshd.so: cannot open shared object file: Permission d enied (ignored)
This is a warning and not an error. Please ignore.