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--- software:r:farber [2017-10-23 18:05] – created sraskar
+++ software:r:farber [2018-04-26 13:23] – [personal/program specific R libraries and extensions] sraskar
@@ Line 27: / Line 27: @@
 for use.
-^r-cran         |All CRAN modules in CRAN which compile and install cleanly   \
+^r-cran         |All CRAN modules in CRAN which compile and install cleanly without any additional dependencies.  N.B. all below library packs require this CRAN modle as a base.|
-                 without any additional dependencies.  N.B. all below library \
+^r-bioconductor |The full suite of[[http://www.bioconductor.org/|Bioconductor]] modules. |
-			  packs require this CRAN modle as a base.                      |
+^r-fftw         |CRAN modules which need FFTW |
-^r-bioconductor |The full suite of                                            \
+^r-gsl          |CRAN modules which need GSL(GNU Scientific Library), GLPK(GNU Linear Programming Kit), or MPFR(GNU MPFR Library)  |
-                 [[http://www.bioconductor.org/|Bioconductor]] modules.        |
+^r-gdal         |CRAN modules which need GDAL(Geospatial Data Abstraction Library) and GEOS(Geometry Engine, Open Source)  |
-^r-fftw         |CRAN modules which need FFTW                                  |
+^r-jags         |CRAN modules which need JAGS(Just Another Gibbs Sampler) and the r-gsl library mentioned above. |
-^r-gsl          |CRAN modules which need GSL(GNU Scientific Library),         \
+^r-mpi          |CRAN modules which need the OpenMPI libraries for parallel computing.  |
-                 GLPK(GNU Linear Programming Kit), or MPFR(GNU MPFR Library)   |
+^r-netcdf       |CRAN modules which need NetCDF, HDF4, HDF5, and UDUNITS libraries. |
-^r-gdal         |CRAN modules which need GDAL(Geospatial Data Abstraction     \
+^r-all          |In addition to loading all the previously mentioned bundles, and CRAN module with multiple dependencies from the above list is also included. |
-                 Library) and GEOS(Geometry Engine, Open Source)               |
+^r-cuda         |Not currently available. |
-^r-jags         |CRAN modules which need JAGS(Just Another Gibbs Sampler) and \
-                 the r-gsl library mentioned above.                            |
-^r-mpi          |CRAN modules which need the OpenMPI libraries for parallel   \
-                 computing.                                                    |
-^r-netcdf       |CRAN modules which need NetCDF, HDF4, HDF5, and UDUNITS      \
-                 libraries.                                                    |
-^r-all          |In addition to loading all the previously mentioned bundles, \
-                 and CRAN module with multiple dependencies from the above    \
-			  list is also included.                                        |
-^r-cuda         |Not currently available.                                      |
 === Searching for modules ===
@@ Line 255: / Line 245: @@
 === Using IT's udbuild environment ===
-IT developed a formalization for installing modules called [[farber:udbuild]]
+IT developed a formalization for installing modules called [[/abstract/farber/install_software|udbuild]]
 which can simplify the installation of modules.  Here is an example ''udbuild''
 script which can be used to install a personal R library.