software:gromacs:gromacs

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software:gromacs:gromacs [2018-03-01 13:19] – [GROMACS] sraskarsoftware:gromacs:gromacs [2023-03-29 14:04] (current) – [Details by cluster] anita
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 ====== GROMACS ====== ====== GROMACS ======
  
-[[http://www.gromacs.org/About_Gromacs|GROMACS]] (GROningen MAchine for Chemical Simulations) is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.+[[http://www.gromacs.org|GROMACS]] (GROningen MAchine for Chemical Simulations) is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
  
 To determine the available versions of GROMACS installed use To determine the available versions of GROMACS installed use
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 $ vpkg_versions gromacs $ vpkg_versions gromacs
 </code> </code>
-===== Batch job ===== 
  
-Templates for Grid Engine queue submission scripts are available for batch GROMACS jobs in ''/opt/templates/gridengine/gromacs'' Copy and edit the template based on your job by following the usage described in ''gromacs.qs''.+=====Details by cluster===== 
 +  * [[software:gromacs:caviness | Caviness]] 
 +  * [[software:gromacs:darwin | DARWIN]] 
 +  * [[software:gromacs:farber | Farber]] 
 +  * [[software:gromacs:mills| Mills]]
  
-<note tip>It is a good idea to periodically check in ''/opt/templates/gridengine/gromacs'' on a specific cluster for changes in existing templates, or the addition of new templates, designed to provide the best performance for a particular version of GROMACS on that cluster.</note> 
  • software/gromacs/gromacs.1519928346.txt.gz
  • Last modified: 2018-03-01 13:19
  • by sraskar